<?xml version="1.0" encoding="UTF-8"?>
<compound>
  <id type="integer">3006</id>
  <title>T3D2964</title>
  <common-name>Cerulenin</common-name>
  <description>Cerulenin is a solid exogenous compound with the formula C12H17NO3 and an average molecular weight of 223.27 g/mol. Cerulenin belongs to the oxirane carboxylic acids and derivatives, a subclass of epoxides within the organic compounds. It is classified as an organoheterocyclic compound.

This compound serves as an antibiotic, antifungal agent, antiinfective agent, and antilipemic drug. Biologically, it acts as an antimetabolite and a fatty acid synthesis inhibitor. Its recorded sources include electrical and electronic equipment, such as magnets and relays, as well as food, food processing and cookware, specifically brew kettles and the preparation of wine or sparkling wine.

Cerulenin targets four proteins, specifically acting as an inhibitor of Beta-ketoacyl-[acyl-carrier-protein] synthase III (fabH), 3-oxoacyl-[acyl-carrier-protein] synthase 1 (fabB), and 3-oxoacyl-[acyl-carrier-protein] synthase 2 (fabF). It irreversibly binds to fatty acid synthase (FASN), specifically the b-ketoacyl-acyl carrier protein synthase condensation enzymes FabH, FabB, and FabF. Because a number of tumor cells and cell lines have been observed to have highly upregulated expression and activity of fatty acid synthase (FAS), the inhibition of FAS by cerulenin leads to apoptosis and cytotoxicity in human cancer cell lines. This effect is believed to be mediated by the accumulation of malonyl-coenzyme A in cells with an upregulated FAS pathway.</description>
  <cas>17397-89-6</cas>
  <pubchem-id>5282054</pubchem-id>
  <chemical-formula>C12H17NO3</chemical-formula>
  <weight>223.120840</weight>
  <appearance>White powder.</appearance>
  <melting-point>93.5°C</melting-point>
  <boiling-point nil="true"/>
  <density nil="true"/>
  <solubility>Slightly soluble</solubility>
  <specific-gravity nil="true"/>
  <flash-point nil="true"/>
  <vapour-pressure nil="true"/>
  <route-of-exposure nil="true"/>
  <target nil="true"/>
  <mechanism-of-toxicity>Irreversibly binds to fatty acid synthase, specifically b-ketoacyl-acyl carrier protein synthase (FabH, FabB and FabF condensation enzymes). A number of tumor cells and cell lines have been observed to have highly upregulated expression and activity of fatty acid synthase (FAS). Inhibition of FAS by cerulenin leads to cytotoxicity and apoptosis in human cancer cell lines, an effect believed to be mediated by the accumulation of malonyl-coenzyme A in cells with an upregulated FAS pathway.</mechanism-of-toxicity>
  <metabolism></metabolism>
  <toxicity>LD50: 547 mg/kg (Oral, Mouse) (A308)</toxicity>
  <lethaldose nil="true"/>
  <carcinogenicity>No indication of carcinogenicity to humans (not listed by IARC).</carcinogenicity>
  <use-source>For use as a biochemical tool, Cerulenin is shown to cause dramatic weight loss in animals</use-source>
  <min-risk-level nil="true"/>
  <health-effects nil="true"/>
  <symptoms>Symptoms of overexposure include moderate to severe erythema (redness) and moderate edema (raised skin), nausea, vomiting, and headache.</symptoms>
  <treatment nil="true"/>
  <created-at type="dateTime">2009-07-21T20:28:13Z</created-at>
  <updated-at type="dateTime">2026-05-14T16:56:22Z</updated-at>
  <interacting-proteins nil="true"/>
  <wikipedia>Cerulenin</wikipedia>
  <uniprot-id></uniprot-id>
  <kegg-compound-id>C12058</kegg-compound-id>
  <omim-id></omim-id>
  <chebi-id>171741</chebi-id>
  <biocyc-id>CPD-6901</biocyc-id>
  <ctd-id nil="true"/>
  <stitch-id>Cerulenin</stitch-id>
  <drugbank-id>DB01034</drugbank-id>
  <pdb-id></pdb-id>
  <actor-id nil="true"/>
  <organism nil="true"/>
  <export type="boolean">true</export>
  <metabolizing-proteins nil="true"/>
  <transporting-proteins nil="true"/>
  <moldb-smiles>[H]\C(C)=C(\[H])C\C([H])=C(/[H])CCC(=O)[C@@]1([H])O[C@@]1([H])C(O)=N</moldb-smiles>
  <moldb-formula>C12H17NO3</moldb-formula>
  <moldb-inchi>InChI=1S/C12H17NO3/c1-2-3-4-5-6-7-8-9(14)10-11(16-10)12(13)15/h2-3,5-6,10-11H,4,7-8H2,1H3,(H2,13,15)/b3-2+,6-5+/t10-,11-/m1/s1</moldb-inchi>
  <moldb-inchikey>GVEZIHKRYBHEFX-NQQPLRFYSA-N</moldb-inchikey>
  <moldb-average-mass type="decimal">223.272</moldb-average-mass>
  <moldb-mono-mass type="decimal">223.120843411</moldb-mono-mass>
  <origin>Exogenous</origin>
  <state>Solid</state>
  <logp>1.2</logp>
  <hmdb-id>HMDB15168</hmdb-id>
  <chembl-id>CHEMBL45627</chembl-id>
  <chemspider-id>26530</chemspider-id>
  <structure-image-file-name nil="true"/>
  <structure-image-content-type nil="true"/>
  <structure-image-file-size type="integer" nil="true"/>
  <structure-image-updated-at type="dateTime" nil="true"/>
  <biodb-id nil="true"/>
  <synthesis-reference>&lt;p&gt;Garfield P. Royer, Craig A. Townsend, &amp;#8220;Cerulenin compounds for fatty acid synthesis inhibition.&amp;#8221; U.S. Patent US5539132, issued July, 1975.&lt;/p&gt;</synthesis-reference>
  <structure-image-caption nil="true"/>
  <chemdb-id>CHEM002327</chemdb-id>
  <dsstox-id>DTXSID2040995</dsstox-id>
  <toxcast-id nil="true"/>
  <stoff-ident-origin nil="true"/>
  <stoff-ident-id nil="true"/>
  <susdat-id>NS00025714</susdat-id>
  <iupac>(2R,3S)-3-[(4E,7E)-nona-4,7-dienoyl]oxirane-2-carboximidic acid</iupac>
  <moldb-polar-surface-area>73.68</moldb-polar-surface-area>
  <moldb-refractivity>73.47930000000001</moldb-refractivity>
  <moldb-polarizability>23.62124170880265</moldb-polarizability>
  <moldb-rotatable-bond-count>7</moldb-rotatable-bond-count>
  <moldb-acceptor-count>4</moldb-acceptor-count>
  <moldb-donor-count>2</moldb-donor-count>
  <moldb-pka-strongest-acidic>-3.383222626551974</moldb-pka-strongest-acidic>
  <moldb-pka-strongest-basic>12.56245441151201</moldb-pka-strongest-basic>
  <moldb-physiological-charge>0</moldb-physiological-charge>
  <moldb-number-of-rings>1</moldb-number-of-rings>
  <moldb-alogps-logp>1.83</moldb-alogps-logp>
  <moldb-alogps-logs>-3.26</moldb-alogps-logs>
  <moldb-alogps-solubility>1.22e-01 g/l</moldb-alogps-solubility>
  <kingdom>Organic compounds</kingdom>
  <superklass>Organoheterocyclic compounds</superklass>
  <klass>Epoxides</klass>
  <subklass>Oxirane carboxylic acids and derivatives</subklass>
  <paper-count type="integer">866</paper-count>
  <sync-id>CED0005653</sync-id>
  <structure-inchikey>GVEZIHKRYBHEFX-NQQPLRFYSA-N</structure-inchikey>
  <structure-fingerprint>80000400000000000000000000000000a000000000000000000000000000000000000000000004004000000000000000000000020000000000000000000000000000000108000020800000000200000000000000000002000000010000000008000000000002800000000000000080000000000000100000000040410000000080000000000000000000001000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000008000000000000000000000000020000000000000000000010000000000000004000000000000040000000000440000000000000000000000000000000</structure-fingerprint>
  <structure-pattern-fingerprint>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</structure-pattern-fingerprint>
  <structure-pickle type="binary" encoding="base64">776t3gAAAAAQAAAAAwAAAAAAAAAQAAAAEAAAAIABBgA4AAAAAwEEBgBgAAAA
AQMGADgAAAADAQQGAGAAAAACAgYAOAAAAAMBBAYAOAAAAAMBBAYAYAAAAAIC
BgBgAAAAAgIGACgAAAADBAgAKAAAAAMCBiA0AAAAAQEECAAgAAAAAgYgNAAA
AAEBBAYAKAAAAAMECABoAAAAAwEBBwBoAAAAAwIBCwABBAMAAgoCAwIBAwID
BAQDBAQDBAUKAgMCAwYFBgQDBgcABwgACAkIAggKAAoLAAsMAAwNAA0OIA0P
KAIMCgBCAQAAAAMKCwwXBAAAAAAAAAAW
</structure-pickle>
  <structure-indexed-at type="dateTime">2026-09-19T04:00:40Z</structure-indexed-at>
</compound>
